Bohrium and MiG Workshop on the 13th of April 2015

We will host a rerun of the 2014 workshop for interested P-Cubed and CINEMA project participants.

To sum up, Bohrium is a free software environment that enables especially scientific calculations to be implemented in the user-friendly Python+NumPy language (resembling Matlab) while preserving high performance execution on multicores/clusters/GPUs. Minimum intrusion Grid (MiG) is our grid infrastructure used for much of our own work and for collaborations with external partners from academia and the industry. It allows secure access to distributed compute and storage resources and provides a number of collaboration tools for virtual organizations like e.g. the P-Cubed and CINEMA participants.

The workshop will include an introduction to both topics followed by hands-on examples for you to get better acquainted with them. We recommend bringing you own laptop for the latter. We will supply example codes but feel free to bring any matrix/vector-based code snippets you would deem suitable for trying out in or porting to run in Bohrium.

Venue

The workshop will take place at NBI, Blegdamsvej 19, building F, in the small lunch-room next to the 'Kantine'. Those of you without access cards may enter through the reception or call Jonas (+45 24432672) for help to enter from the court between buildings F and M.

NBI Blegdamsvej map

Program

Workshop Requirements

You will need a laptop for the practical exercises, but we can team up as necessary if you don't bring one. It doesn't really matter if it runs Windows, Mac OSX or Linux, because for almost all exercises you only really need a web browser (Internet Explorer/Firefox/Chrome/...).
One or two optional exercises only work with Mac/Linux but don't worry if you use Windows.
It may be an advantage to have a working Python-2.x+Numpy/SciPy installation for the code exercises, but it is not strictly required. Help on installing it on different platforms is available on the SciPy install page.
Installing Bohrium locally got easier since last year with better packaging especially on OSX and Linux. You can give it a go if you are brave, but you don't have to worry too much about it: we can just use our installations on the grid for the exercises.
Finally some of the optional advanced exercises require an SFTP client (like FireFTP for Firefox), the Paramiko and Mercurial software, so you can install those ahead as well if you want to be totally prepared.

Workshop Material

We will make slides and other relevant material from the workshop available here during or after the workshop.

Questions

Please write an email to Jonas Bardino if you have questions about the workshop.